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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_16303714_16308156_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
16303714 - 16308156
Intron Length:
4443

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTATGGTTC
5'SS Class:
strong_major
3'SS Sequence:
TGTTTTGCTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTTTAAT
U12 Branch Point Sequence:
TTTCTCTTGTCT
Flanking Amino Acid:
NGTVSPSAFLEPFSASVWVM
Intron Amino Acid Position:
411

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.3
0.79
0.9
75.6
34.9
Major BPS
81.8
0.79
1.1
84
34.5
Major PPT
82.6
0.73
0.9
77.3
37
Minor 5ss
47.4
-0.3
3.1
66.9
44.7
Minor BPS
48
-0
3.5
84.21
36.5

Associated Gene:

Gene:
GRIN2A
Ensembl Gene ID:
ENSAPLG00000004053
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000031628
16259639 - 16480336
220698
ENSAPLT00000004160
16259639 - 16350348
90710