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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_16308604_16310066_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
16308604 - 16310066
Intron Length:
1463

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAA|GTAAGTAAA
5'SS Class:
strong_major
3'SS Sequence:
TCTCTTTTAACAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GAGAAAT
U12 Branch Point Sequence:
TCTCTTTTAACA
Flanking Amino Acid:
TVPCRKFVKINNSTNEGTNV
Intron Amino Acid Position:
303

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.7
0.89
0.9
86
23.6
Major BPS
46.7
-0.2
1.3
51
41.5
Major PPT
83.3
0.75
0.8
80.3
30.3
Minor 5ss
36.8
-1.5
2.7
42.6
38.4
Minor BPS
72.5
0.7
1.2
75.92
35.5

Associated Gene:

Gene:
GRIN2A
Ensembl Gene ID:
ENSAPLG00000004053
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004160
16259639 - 16350348
90710
ENSAPLT00000031628
16259639 - 16480336
220698