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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_16323144_16334709_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
16323144 - 16334709
Intron Length:
11566

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTAAGGATT
5'SS Class:
strong_major
3'SS Sequence:
TTTTCCTTCCTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAC
U12 Branch Point Sequence:
TTTTCCTTCCTA
Flanking Amino Acid:
KNDRPSHTLHKFMMNVTWEG
Intron Amino Acid Position:
196

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.5
0.79
0.9
85.3
31.4
Major BPS
90.1
0.99
0.7
91.6
20.3
Major PPT
83.6
0.76
0.7
77.5
31.2
Minor 5ss
39.9
-1.1
3.4
58
40.7
Minor BPS
47.2
-0.2
3.6
78.78
38.5

Associated Gene:

Gene:
GRIN2A
Ensembl Gene ID:
ENSAPLG00000004053
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000031628
16259639 - 16480336
220698
ENSAPLT00000004160
16259639 - 16350348
90710