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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_1636912_1637882_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
1636912 - 1637882
Intron Length:
971

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATT|GTGAGTGAA
5'SS Class:
major
3'SS Sequence:
TTTTCACTTGCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
TGATTTTTAAAT
Flanking Amino Acid:
YLGSAPGRCIFGHKEIPHLP
Intron Amino Acid Position:
496

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.2
0.52
1
68.4
31.2
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
87.5
0.84
0.7
82
28.7
Minor 5ss
29.1
-2.4
3.2
36.8
41.9
Minor BPS
67.8
0.64
1.3
78.53
37.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000018609
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044371
1636800 - 1642425
5626