Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_1639402_1639634_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

1639402 - 1639634

Intron Length:

233

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAC|GTAAGCAGA

5'SS Class:

major

3'SS Sequence:

GTTGCCCTTGCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

ATCCCAT

U12 Branch Point Sequence:

CCATCCCCACCA

Flanking Amino Acid:

EFLYNPFLRVTEEAVQKFTG

Intron Amino Acid Position:

238

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

72.8

0.54

1.3

68.9

43.8

Major BPS

63.5

0.33

1.2

72.5

34.6

Major PPT

77.4

0.62

0.9

69.9

36.5

Minor 5ss

40.1

-1.1

2.8

47.9

41.4

Minor BPS

43.6

-0.4

2.1

52.97

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000018609

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000044548

1638236 - 1642425

4190

ENSAPLT00000044371

1636800 - 1642425

5626

ENSAPLT00000027914

1638967 - 1642608

3642