Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_1640170_1640311_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

1640170 - 1640311

Intron Length:

142

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTACCCCCA

5'SS Class:

major

3'SS Sequence:

TGTCACCCCGCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

GTGTCAC

U12 Branch Point Sequence:

CCTGTGTCACCC

Flanking Amino Acid:

GSPDAPALFSGDTLFVGGCG

Intron Amino Acid Position:

143

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

64.3

0.34

1.3

53.6

45.3

Major BPS

57.2

0.18

1.4

63.1

44.5

Major PPT

69.8

0.45

0.9

62.5

34.2

Minor 5ss

42.6

-0.8

3.1

57.9

46.3

Minor BPS

37.5

-0.9

2.3

44.77

44.2

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000018609

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000044548

1638236 - 1642425

4190

ENSAPLT00000044371

1636800 - 1642425

5626

ENSAPLT00000027914

1638967 - 1642608

3642