Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_1640421_1640702_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

1640421 - 1640702

Intron Length:

282

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

ACG|GTGCGTGTG

5'SS Class:

major

3'SS Sequence:

TCCCTCCCCACAG|T

3'SS Class:

major_PPT

U2 Branch Point Sequence:

CCTTGAC

U12 Branch Point Sequence:

ATAGCCTTGACC

Flanking Amino Acid:

HKVAPNEELTFGAIHVRCLF

Intron Amino Acid Position:

107

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

72.7

0.54

1.1

63.7

42.6

Major BPS

61.6

0.29

1.1

54.6

40.8

Major PPT

74.5

0.55

0.7

68.2

25.5

Minor 5ss

30.3

-2.3

3.4

40.1

45.9

Minor BPS

69.6

0.6

1.4

72.89

38.2

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000018609

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000027914

1638967 - 1642608

3642

ENSAPLT00000044548

1638236 - 1642425

4190

ENSAPLT00000044371

1636800 - 1642425

5626