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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_1641913_1642548_R

Intron Information:

Intron Rank:
1
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
1641913 - 1642548
Intron Length:
636

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGGCATT
5'SS Class:
strong_major
3'SS Sequence:
GTCGGTGCTGGAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TAATGAA
U12 Branch Point Sequence:
GGATAATGAAGG
Flanking Amino Acid:
SLPLNPTGEQDNYMYLVIEE
Intron Amino Acid Position:
21

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.3
0.78
1
81.8
38.5
Major BPS
67.7
0.44
1
58
38.9
Major PPT
47.5
-0.1
1.7
49.8
43.9
Minor 5ss
43.9
-0.7
3.2
65.5
45.8
Minor BPS
39.7
-0.9
2
41.65
41.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000018609
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027914
1638967 - 1642608
3642