Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_1645527_1646173_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

1645527 - 1646173

Intron Length:

647

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTGAGGAGT

5'SS Class:

strong_major

3'SS Sequence:

GCCTTGCTTGCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TGCTGAT

U12 Branch Point Sequence:

TGGTGCTGATGC

Flanking Amino Acid:

NSSEPPAVFTGDTLFVAGCG

Intron Amino Acid Position:

177

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

86.7

0.86

0.8

78.6

37.3

Major BPS

76.2

0.65

1.1

65.3

43.7

Major PPT

75.6

0.58

0.9

68.5

37.3

Minor 5ss

28.5

-2.5

3.1

39.7

45.9

Minor BPS

41.2

-0.6

2.2

51.62

45.3

Associated Gene:

Gene:

HAGH

Ensembl Gene ID:

ENSAPLG00000008216

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000008564

1643993 - 1650746

6754

ENSAPLT00000032421

1644805 - 1649634

4830