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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_1647464_1649000_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
1647464 - 1649000
Intron Length:
1537

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAACTTCA
5'SS Class:
major
3'SS Sequence:
TCTGACCTTCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGTTCAT
U12 Branch Point Sequence:
TCATCCTTACCA
Flanking Amino Acid:
LTTVLTTHHHWDHAGGNEKL
Intron Amino Acid Position:
57

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.9
0.59
1.2
70.3
36.4
Major BPS
84.8
0.86
1
85.7
34.9
Major PPT
76.2
0.59
0.9
66
40.6
Minor 5ss
46.2
-0.4
2.5
56.5
42.9
Minor BPS
70.5
0.64
1.6
76.04
41.3

Associated Gene:

Gene:
HAGH
Ensembl Gene ID:
ENSAPLG00000008216
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032421
1644805 - 1649634
4830