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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_16477139_16479940_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
16477139 - 16479940
Intron Length:
2802

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAGGGTCA
5'SS Class:
major
3'SS Sequence:
CATTTTCTCATAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTGTCAT
U12 Branch Point Sequence:
ATTTTGTCATTT
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.3
0.53
1.1
62
39.1
Major BPS
84.8
0.86
1.1
85.7
34.9
Major PPT
77.5
0.62
0.8
72.7
31.8
Minor 5ss
35.8
-1.6
3.5
44.1
45.7
Minor BPS
45.3
-0.2
2.3
69.81
41.8

Associated Gene:

Gene:
GRIN2A
Ensembl Gene ID:
ENSAPLG00000004053
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000031628
16259639 - 16480336
220698