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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_16480169_16480264_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
16480169 - 16480264
Intron Length:
96

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAGCCCCT
5'SS Class:
major
3'SS Sequence:
CTCTCATCACCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTCTCAT
U12 Branch Point Sequence:
TGTGTCTGAACC
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
65
0.36
1.3
57.2
47.5
Major BPS
82.6
0.81
0.9
83.3
27.7
Major PPT
70.5
0.46
0.9
63.1
37.3
Minor 5ss
44.7
-0.6
3.2
66.1
45
Minor BPS
62.8
0.38
1.6
71.67
39.3

Associated Gene:

Gene:
GRIN2A
Ensembl Gene ID:
ENSAPLG00000004053
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000031628
16259639 - 16480336
220698