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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_1649735_1650696_R

Intron Information:

Intron Rank:
1
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
1649735 - 1650696
Intron Length:
962

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
AGG|GCTGGAGGC
5'SS Class:
weak_major
3'SS Sequence:
GGCTAACCTGAAG|T
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
CTTTTAC
U12 Branch Point Sequence:
CTACTTTTACCC
Flanking Amino Acid:
RLPSTKCGALGLAVFGSLGP
Intron Amino Acid Position:
17

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
59.4
0.22
1.4
56.7
41.9
Major BPS
74.2
0.6
1
67
39.4
Major PPT
53
0.07
1.1
50
38.4
Minor 5ss
15
-4
3.6
16.3
28.9
Minor BPS
50.7
0
1.6
59.59
39.9

Associated Gene:

Gene:
HAGH
Ensembl Gene ID:
ENSAPLG00000008216
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008564
1643993 - 1650746
6754