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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_16519471_16520797_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
16519471 - 16520797
Intron Length:
1327

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGTATT
5'SS Class:
strong_major
3'SS Sequence:
TTTGTTTTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAA
U12 Branch Point Sequence:
GTGTTTTTAACC
Flanking Amino Acid:
TCRAITDQFREYQSIQAVQA
Intron Amino Acid Position:
58

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
95.7
1.08
0.6
96
12.4
Major BPS
87.3
0.93
0.8
78
36.5
Major PPT
92.4
0.95
0.7
88.3
28.9
Minor 5ss
36.2
-1.6
2.9
50.6
45.9
Minor BPS
73.1
0.7
1.2
74.27
36.7

Associated Gene:

Gene:
EMP2
Ensembl Gene ID:
ENSAPLG00000003965
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004065
16518236 - 16523351
5116