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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_16520892_16523239_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
16520892 - 16523239
Intron Length:
2348

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAT|GTATGTGTC
5'SS Class:
major
3'SS Sequence:
TTTTATTTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
TTTGCTTTTATT
Flanking Amino Acid:
ALLFISTIDNAWWVGDNFST
Intron Amino Acid Position:
27

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.9
0.63
1
74.3
34.2
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
92.9
0.96
0.7
88.5
28.1
Minor 5ss
45.8
-0.4
3.1
65.2
39.7
Minor BPS
64.7
0.55
1.7
83.31
38.3

Associated Gene:

Gene:
EMP2
Ensembl Gene ID:
ENSAPLG00000003965
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004065
16518236 - 16523351
5116