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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_16613064_16614713_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
16613064 - 16614713
Intron Length:
1650

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCA|GTAAGTAGA
5'SS Class:
major
3'SS Sequence:
ATCTCTTCCACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CGACAAT
U12 Branch Point Sequence:
ATCTCTTCCACA
Flanking Amino Acid:
IELCRDEPQYQNVCSSRIDI
Intron Amino Acid Position:
413

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.8
0.63
1
72.1
39.4
Major BPS
45.1
-0.3
1.4
48.5
41.9
Major PPT
78.1
0.63
0.8
72.5
31.6
Minor 5ss
37.3
-1.4
2.7
48
41.7
Minor BPS
50.1
-0
2
65.52
41.3

Associated Gene:

Gene:
TEKT5
Ensembl Gene ID:
ENSAPLG00000003701
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003790
16613033 - 16639842
26810