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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_16631071_16634349_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
16631071 - 16634349
Intron Length:
3279

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAC|GTGAGTATA
5'SS Class:
major
3'SS Sequence:
TTTTCCTTACTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ACTTCAA
U12 Branch Point Sequence:
TTTTCCTTACTA
Flanking Amino Acid:
FYHGVEKVDGTVSVPVTWAK
Intron Amino Acid Position:
287

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.9
0.66
1.2
83.2
30.8
Major BPS
69.4
0.48
1
71.6
33.8
Major PPT
79.9
0.67
0.8
75
34.6
Minor 5ss
35.2
-1.7
2.8
41.6
38.3
Minor BPS
78.5
0.89
1.5
87.11
31.6

Associated Gene:

Gene:
TEKT5
Ensembl Gene ID:
ENSAPLG00000003701
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003790
16613033 - 16639842
26810