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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_16634494_16636453_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
16634494 - 16636453
Intron Length:
1960

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGG|GTAAGACTT
5'SS Class:
strong_major
3'SS Sequence:
TTTCCCTTCACAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CATTAAA
U12 Branch Point Sequence:
TTTCCCTTCACA
Flanking Amino Acid:
KLAQRINHQLGINRDAQHAL
Intron Amino Acid Position:
239

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.6
0.77
1
75.5
40.6
Major BPS
70.2
0.5
1
71.6
30.1
Major PPT
84.8
0.78
0.7
79.7
25.7
Minor 5ss
37.5
-1.4
3.3
49.3
46.4
Minor BPS
74.1
0.75
1.7
85.03
34.5

Associated Gene:

Gene:
TEKT5
Ensembl Gene ID:
ENSAPLG00000003701
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003790
16613033 - 16639842
26810