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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_16645665_16646785_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
16645665 - 16646785
Intron Length:
1121

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGAGAA
5'SS Class:
strong_major
3'SS Sequence:
CTAATGTTTGTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTAAT
U12 Branch Point Sequence:
TGTTTTCTAATG
Flanking Amino Acid:
DGAVIITTPQEVSLQDVRKE
Intron Amino Acid Position:
187

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.4
0.98
0.8
80.4
26.8
Major BPS
94.5
1.11
0.6
92.2
14.6
Major PPT
71.5
0.48
0.9
65.5
40.7
Minor 5ss
29.7
-2.3
3.3
37.8
47
Minor BPS
56.4
0.06
1.7
64.06
38.4

Associated Gene:

Gene:
NUBP1
Ensembl Gene ID:
ENSAPLG00000003389
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003498
16641340 - 16648564
7225