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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_16646897_16647012_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
16646897 - 16647012
Intron Length:
116

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAAGCTA
5'SS Class:
strong_major
3'SS Sequence:
CATGTTTTCCTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAC
U12 Branch Point Sequence:
AGTATTTTAACT
Flanking Amino Acid:
MSGFICPKCKNESQIFPPTT
Intron Amino Acid Position:
224

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.5
0.72
1
72
39.3
Major BPS
89.7
0.98
0.7
89.9
20
Major PPT
72.9
0.52
0.9
65.4
40.7
Minor 5ss
33.7
-1.9
3.5
47
48.3
Minor BPS
69.8
0.7
1.2
79.52
36.2

Associated Gene:

Gene:
NUBP1
Ensembl Gene ID:
ENSAPLG00000003389
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003498
16641340 - 16648564
7225