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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_16647116_16647840_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
16647116 - 16647840
Intron Length:
725

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAAAGTCA
5'SS Class:
strong_major
3'SS Sequence:
CCTGTCCTTTAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
CTGTCCTTTAAG
Flanking Amino Acid:
LGKVPLDPQIGKSCDKGQSF
Intron Amino Acid Position:
258

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.6
0.72
1
71.7
34.2
Major BPS
100
1.24
0.5
100
0
Major PPT
68.9
0.43
1
71.4
33.4
Minor 5ss
36.4
-1.5
3.3
47.9
47.8
Minor BPS
54.9
0.01
1.9
60.43
47

Associated Gene:

Gene:
NUBP1
Ensembl Gene ID:
ENSAPLG00000003389
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003498
16641340 - 16648564
7225