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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_16649301_16649776_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
3UTR
Intron Coordinates:
16649301 - 16649776
Intron Length:
476

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCG|GTAAAAACA
5'SS Class:
major
3'SS Sequence:
TTTCTGTATTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTTAA
U12 Branch Point Sequence:
TTTTTCTGTATT
Flanking Amino Acid:
3UTR
Intron Amino Acid Position:
3UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.5
0.55
1
68
36.8
Major BPS
79.5
0.73
0.9
70
36.9
Major PPT
82.8
0.74
0.9
81.3
35.4
Minor 5ss
33.6
-1.9
3
42.2
44.2
Minor BPS
62.2
0.46
1.8
84.17
36.4

Associated Gene:

Gene:
TVP23A
Ensembl Gene ID:
ENSAPLG00000003074
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003134
16649163 - 16658784
9622