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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_16649866_16650266_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
16649866 - 16650266
Intron Length:
401

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGA|GTAAGTACC
5'SS Class:
major
3'SS Sequence:
GTTCATTCTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGTTCAT
U12 Branch Point Sequence:
ATGGTCACACCT
Flanking Amino Acid:
RFFVTADVPKRQTRISDDCI
Intron Amino Acid Position:
216

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.8
0.63
1
72.6
37.3
Major BPS
84.8
0.86
1
85.7
34.9
Major PPT
79.8
0.67
0.9
73.5
36.7
Minor 5ss
38.3
-1.3
2.7
43.9
37
Minor BPS
41.5
-0.5
2
58.79
44.4

Associated Gene:

Gene:
TVP23A
Ensembl Gene ID:
ENSAPLG00000003074
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003134
16649163 - 16658784
9622