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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_16655176_16656055_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
16655176 - 16656055
Intron Length:
880

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGATGA
5'SS Class:
strong_major
3'SS Sequence:
ACTGTGTCACCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AAATAAC
U12 Branch Point Sequence:
ATGCAAATAACT
Flanking Amino Acid:
LLSFDFWSVKNVTGRLLVGL
Intron Amino Acid Position:
101

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.6
0.96
0.8
77.8
33.3
Major BPS
61.3
0.28
1
62
30.6
Major PPT
64.3
0.32
1
55.5
44.1
Minor 5ss
37.3
-1.4
3
47.8
47.6
Minor BPS
46.3
-0.2
2
67.8
41.9

Associated Gene:

Gene:
TVP23A
Ensembl Gene ID:
ENSAPLG00000003074
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003134
16649163 - 16658784
9622