About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_16680553_16682909_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
16680553 - 16682909
Intron Length:
2357

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTTAGTAAT
5'SS Class:
strong_major
3'SS Sequence:
TTTCTCATTCTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTCAT
U12 Branch Point Sequence:
TATCCATTGAAC
Flanking Amino Acid:
SGNEESDLFADSEIDASNYD
Intron Amino Acid Position:
43

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.5
0.86
1
88.2
26.7
Major BPS
94.9
1.12
0.6
93.9
14.7
Major PPT
82
0.72
0.8
74.8
34.8
Minor 5ss
33.8
-1.9
2.6
42.8
44.1
Minor BPS
53.7
0.1
1.8
67.19
37.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000028876
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041539
16680409 - 16703932
23524