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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_16683039_16683462_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
16683039 - 16683462
Intron Length:
424

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTATGAAAA
5'SS Class:
strong_major
3'SS Sequence:
CTTTTTTTGGTAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTATGAT
U12 Branch Point Sequence:
TGTTACTGTATT
Flanking Amino Acid:
SNAREAYARIAELAEYVLKD
Intron Amino Acid Position:
86

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.8
0.82
0.9
78.7
29.9
Major BPS
72.3
0.55
1.1
63.4
42.8
Major PPT
81.3
0.71
0.9
80.6
31.4
Minor 5ss
38.9
-1.3
2.8
48.3
47.4
Minor BPS
50.2
0.09
2
74.86
41.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000028876
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041539
16680409 - 16703932
23524