About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_16688066_16689275_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
16688066 - 16689275
Intron Length:
1210

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTATGTACA
5'SS Class:
strong_major
3'SS Sequence:
ATTCTGCTGTCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTAAAA
U12 Branch Point Sequence:
GAGCCTTTAAAA
Flanking Amino Acid:
NALGRSFVIPVSGSSAPLIP
Intron Amino Acid Position:
204

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.1
0.73
0.9
75.1
34.3
Major BPS
73.1
0.58
1
79.6
29.1
Major PPT
71.5
0.48
1
70
40.8
Minor 5ss
42.2
-0.9
2.4
48.9
42.2
Minor BPS
57.4
0.23
1.4
60.37
38.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000028876
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041539
16680409 - 16703932
23524