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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_16689618_16691723_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
16689618 - 16691723
Intron Length:
2106

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTAAGTGTG
5'SS Class:
strong_major
3'SS Sequence:
TATGTTTCTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTCAA
U12 Branch Point Sequence:
TCTTTCTCAACT
Flanking Amino Acid:
FSPSFPVNVCGLEIFKEVQV
Intron Amino Acid Position:
272

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.1
0.9
0.9
77.9
36.8
Major BPS
85.7
0.89
0.8
85.9
22.5
Major PPT
82.3
0.73
0.9
73.9
41.3
Minor 5ss
36.4
-1.5
3.3
46.1
43.6
Minor BPS
74.5
0.85
1.5
87.74
37.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000028876
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041539
16680409 - 16703932
23524