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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_16691790_16692248_F

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
16691790 - 16692248
Intron Length:
459

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTGAGTTTA
5'SS Class:
strong_major
3'SS Sequence:
GTTATTTCTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTGCAT
U12 Branch Point Sequence:
TTTGTGTTATTT
Flanking Amino Acid:
IPSEELFKRPRSVEVFCRAL
Intron Amino Acid Position:
294

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.7
0.8
0.9
83
23.9
Major BPS
75
0.62
1.4
85.7
34.9
Major PPT
82.3
0.73
0.9
73.7
41.6
Minor 5ss
40
-1.1
2.9
49.4
41.3
Minor BPS
48.3
-0
2.3
74.56
43.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000028876
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041539
16680409 - 16703932
23524