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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_16694239_16694334_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
16694239 - 16694334
Intron Length:
96

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTAGGCTCA
5'SS Class:
major
3'SS Sequence:
GTGATTTATTTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTCAT
U12 Branch Point Sequence:
TCTACTGTGATT
Flanking Amino Acid:
DLVEMQEMISCMQDASGCSS
Intron Amino Acid Position:
920

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.8
0.51
1.1
61.3
40.2
Major BPS
94.9
1.12
0.6
93.9
14.7
Major PPT
68.7
0.42
1
66.7
44.1
Minor 5ss
42.9
-0.8
3.1
53.2
46
Minor BPS
49.3
0.03
2
70.86
41.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000028876
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041539
16680409 - 16703932
23524