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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_16694407_16695761_F

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
16694407 - 16695761
Intron Length:
1355

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGC|GTAAGTGAA
5'SS Class:
major
3'SS Sequence:
TATTTTCTTCCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTATAT
U12 Branch Point Sequence:
ATTTGTTTATTT
Flanking Amino Acid:
AIKNLRKIEFALGPAYGLQG
Intron Amino Acid Position:
944

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
69.9
0.47
1.3
68.5
38.7
Major BPS
79.2
0.73
1
75.3
39.4
Major PPT
89.2
0.88
0.7
81.5
35.8
Minor 5ss
32.9
-1.9
3.2
35.5
41.5
Minor BPS
56
0.27
2
77.64
39.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000028876
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041539
16680409 - 16703932
23524