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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_16695843_16697856_F

Intron Information:

Intron Rank:
13
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
16695843 - 16697856
Intron Length:
2014

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGA|GTGAGTAAT
5'SS Class:
major
3'SS Sequence:
TGTTGTCACCCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTAAAA
U12 Branch Point Sequence:
TTGTTGTCACCC
Flanking Amino Acid:
LPSFPSLQHLDLDALSENGI
Intron Amino Acid Position:
971

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.7
0.58
1
76.8
33.7
Major BPS
73.1
0.58
1
79.6
29.1
Major PPT
70.9
0.47
1
62.6
43.4
Minor 5ss
33.2
-1.9
2.8
38.8
40.3
Minor BPS
44.6
-0.4
2.4
61.55
44.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000028876
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041539
16680409 - 16703932
23524