About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_16697950_16700891_F

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
16697950 - 16700891
Intron Length:
2942

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAA|GTAAGTTTC
5'SS Class:
strong_major
3'SS Sequence:
TCATCTACTGTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATCTCAT
U12 Branch Point Sequence:
ATCTCATCTACT
Flanking Amino Acid:
FPTLRSLEILNLSQNKITDV
Intron Amino Acid Position:
1002

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.5
0.88
0.9
85.1
25.6
Major BPS
86.1
0.9
0.7
85.7
22.9
Major PPT
72.3
0.5
0.9
67.1
33.7
Minor 5ss
46.5
-0.4
2.7
61.9
36.7
Minor BPS
48.6
-0
2.1
72.2
44

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000028876
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041539
16680409 - 16703932
23524