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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_16700976_16701755_F

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
16700976 - 16701755
Intron Length:
780

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGTGGT
5'SS Class:
strong_major
3'SS Sequence:
TTGTTGTCTGCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTGAT
U12 Branch Point Sequence:
TTGATTGTAACT
Flanking Amino Acid:
LPALSSLTTLSLYNNNICDF
Intron Amino Acid Position:
1030

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
95.7
1.08
0.7
85.2
32.2
Major BPS
87.6
0.93
0.8
77.4
37.3
Major PPT
82.6
0.73
0.9
77.3
37
Minor 5ss
34.4
-1.8
3.3
49.7
46.6
Minor BPS
53.6
0.19
2
75.56
41.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000028876
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041539
16680409 - 16703932
23524