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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_16701840_16703075_F

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
16701840 - 16703075
Intron Length:
1236

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGA|GTGAGTATG
5'SS Class:
major
3'SS Sequence:
TTACTCCCCTCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTGAT
U12 Branch Point Sequence:
GTTTTTTTACTC
Flanking Amino Acid:
LHAMASLRVLDVQYNKITGV
Intron Amino Acid Position:
1058

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.4
0.55
1
71.6
40.2
Major BPS
87.6
0.93
0.8
77.4
37.3
Major PPT
76.6
0.6
0.8
74.1
30.7
Minor 5ss
35.2
-1.7
2.8
39
40.2
Minor BPS
61.1
0.33
1.6
69.9
36.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000028876
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041539
16680409 - 16703932
23524