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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_16703160_16703838_F

Intron Information:

Intron Rank:
17
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
16703160 - 16703838
Intron Length:
679

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTT|GTAAGTTTC
5'SS Class:
major
3'SS Sequence:
CATGCACTTACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTTAA
U12 Branch Point Sequence:
CCTTTCTTAACA
Flanking Amino Acid:
LRKCPHIKNLLIWNPTIPYG
Intron Amino Acid Position:
1086

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.9
0.66
1
77
32.4
Major BPS
82.2
0.8
0.8
71.9
35.8
Major PPT
70.8
0.47
0.9
61.9
38.7
Minor 5ss
47.3
-0.3
2.8
67.6
37.4
Minor BPS
78.4
0.89
1.2
78.35
38.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000028876
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041539
16680409 - 16703932
23524