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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_16723391_16730969_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
16723391 - 16730969
Intron Length:
7579

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTGAGAGCG
5'SS Class:
major
3'SS Sequence:
TTTTCTCCTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATTAAT
U12 Branch Point Sequence:
ATGTAATTAATT
Flanking Amino Acid:
ARSIHSLDHLKYMYHVLTKN
Intron Amino Acid Position:
27

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.6
0.58
1
62.3
36.5
Major BPS
83
0.82
0.8
82
24.9
Major PPT
87
0.83
0.6
86.1
20.7
Minor 5ss
27
-2.6
3.2
31
36.2
Minor BPS
59.5
0.38
1.8
76.79
39.6

Associated Gene:

Gene:
CLEC16A
Ensembl Gene ID:
ENSAPLG00000002585
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045282
16723311 - 16802554
79244
ENSAPLT00000038623
16723311 - 16802554
79244
ENSAPLT00000023426
16723311 - 16802554
79244
ENSAPLT00000017712
16723311 - 16802554
79244