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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_16730577_16730969_F

Intron Information:

Intron Rank:
1
Intron Class:
minor-like
Intron Phase:
2
Intron Coordinates:
16730577 - 16730969
Intron Length:
393

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACT|GTATGCTTA
5'SS Class:
weak_minor
3'SS Sequence:
TTTTCTCCTTTAG|G
3'SS Class:
degenerate_minor
U2 Branch Point Sequence:
AATTAAT
U12 Branch Point Sequence:
ATGTAATTAATT
Flanking Amino Acid:
LTGIAFPCWLLYMYHVLTKN
Intron Amino Acid Position:
14

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
62.1
0.29
1.2
61
40.2
Major BPS
83
0.82
0.8
82
24.9
Major PPT
87
0.83
0.6
86.1
20.7
Minor 5ss
72.5
0.76
2.1
82.4
37.2
Minor BPS
59.5
0.38
1.8
76.79
39.6

Associated Gene:

Gene:
CLEC16A
Ensembl Gene ID:
ENSAPLG00000002585
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002611
16730536 - 16802292
71757