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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_16731099_16732325_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
16731099 - 16732325
Intron Length:
1227

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGA|GTAAGTACT
5'SS Class:
major
3'SS Sequence:
CACTTAATTTTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTAAAT
U12 Branch Point Sequence:
CTTCACTTAATT
Flanking Amino Acid:
WGDQNDSSVFDFFLEKNMFV
Intron Amino Acid Position:
57

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.2
0.67
1
78.2
36.3
Major BPS
73.5
0.58
1
79.3
29.4
Major PPT
70.4
0.46
0.9
67.1
37.8
Minor 5ss
39.6
-1.2
2.8
49.5
40.3
Minor BPS
69.5
0.69
1.5
82.51
38.8

Associated Gene:

Gene:
CLEC16A
Ensembl Gene ID:
ENSAPLG00000002585
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023426
16723311 - 16802554
79244
ENSAPLT00000017712
16723311 - 16802554
79244
ENSAPLT00000002611
16730536 - 16802292
71757
ENSAPLT00000045282
16723311 - 16802554
79244
ENSAPLT00000038623
16723311 - 16802554
79244