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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_16732460_16733232_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
16732460 - 16733232
Intron Length:
773

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGT|GTAAGGACA
5'SS Class:
major
3'SS Sequence:
TCTTGTTTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TTTTTATTAATC
Flanking Amino Acid:
FENISHETSLYYLLSNNYVN
Intron Amino Acid Position:
102

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
69.2
0.45
1.1
65.3
40.3
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
89.8
0.89
0.7
87.9
29.4
Minor 5ss
34.5
-1.8
3.2
41.9
44.5
Minor BPS
73.7
0.72
1.5
83.09
29.8

Associated Gene:

Gene:
CLEC16A
Ensembl Gene ID:
ENSAPLG00000002585
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017712
16723311 - 16802554
79244
ENSAPLT00000002611
16730536 - 16802292
71757
ENSAPLT00000045282
16723311 - 16802554
79244
ENSAPLT00000038623
16723311 - 16802554
79244
ENSAPLT00000023426
16723311 - 16802554
79244