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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_16736207_16737086_F

Intron Information:

Intron Rank:
6
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
16736207 - 16737086
Intron Length:
880

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGA|GTAAGCTTT
5'SS Class:
weak_major
3'SS Sequence:
CTCTGTTTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATTTAC
U12 Branch Point Sequence:
ATTTACTTAGCT
Flanking Amino Acid:
ELDNCVQTDEEHRNRGKLSD
Intron Amino Acid Position:
228

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.6
0.53
1.1
72.5
39.9
Major BPS
70
0.5
0.9
61.4
35.9
Major PPT
85.8
0.81
0.8
83.6
31.4
Minor 5ss
53.8
0.13
2.7
70.1
41.4
Minor BPS
69.6
0.69
1.7
87.93
36.8

Associated Gene:

Gene:
CLEC16A
Ensembl Gene ID:
ENSAPLG00000002585
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002611
16730536 - 16802292
71757
ENSAPLT00000045282
16723311 - 16802554
79244
ENSAPLT00000038623
16723311 - 16802554
79244
ENSAPLT00000023426
16723311 - 16802554
79244
ENSAPLT00000017712
16723311 - 16802554
79244