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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_16737932_16745209_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
16737932 - 16745209
Intron Length:
7278

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTACGTATT
5'SS Class:
strong_major
3'SS Sequence:
TTAATATTTACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTTAAT
U12 Branch Point Sequence:
AAACTCTTAATA
Flanking Amino Acid:
LQVSLYLLSQTKSSIRCFIK
Intron Amino Acid Position:
318

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80
0.71
1
84.8
32.7
Major BPS
87
0.92
0.9
86.2
29.1
Major PPT
79.9
0.67
0.9
73.3
40.8
Minor 5ss
42.3
-0.8
3.1
59.9
38.7
Minor BPS
64.6
0.46
1.2
65.3
34.3

Associated Gene:

Gene:
CLEC16A
Ensembl Gene ID:
ENSAPLG00000002585
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017712
16723311 - 16802554
79244