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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_16750098_16755555_F

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
16750098 - 16755555
Intron Length:
5458

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGCAAT
5'SS Class:
strong_major
3'SS Sequence:
TCTCTTTTCATAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTGAA
U12 Branch Point Sequence:
GTATATTGAAAT
Flanking Amino Acid:
CLLYAMSHNKDGKIRLATLE
Intron Amino Acid Position:
509

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92
0.99
0.8
87
30
Major BPS
79.4
0.73
0.9
69.6
37.5
Major PPT
82.8
0.74
0.7
79.4
26.2
Minor 5ss
41
-1
2.9
56.9
47.4
Minor BPS
49.9
0.08
1.7
69.39
40.6

Associated Gene:

Gene:
CLEC16A
Ensembl Gene ID:
ENSAPLG00000002585
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045282
16723311 - 16802554
79244