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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_16756175_16757372_F

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
16756175 - 16757372
Intron Length:
1198

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATATACG
5'SS Class:
major
3'SS Sequence:
TTTTTATTGAAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TGTTCCTTTATT
Flanking Amino Acid:
SVHLLRRFYKGEEIFLDMFE
Intron Amino Acid Position:
589

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.1
0.66
1
70.4
39.7
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
71.9
0.49
1.2
75.4
37.8
Minor 5ss
41.5
-0.9
2.6
51.8
44.8
Minor BPS
75.7
0.89
1.5
89.03
35.4

Associated Gene:

Gene:
CLEC16A
Ensembl Gene ID:
ENSAPLG00000002585
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023426
16723311 - 16802554
79244
ENSAPLT00000017712
16723311 - 16802554
79244
ENSAPLT00000002611
16730536 - 16802292
71757
ENSAPLT00000045282
16723311 - 16802554
79244
ENSAPLT00000038623
16723311 - 16802554
79244