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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_16764484_16774484_F

Intron Information:

Intron Rank:
18
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
16764484 - 16774484
Intron Length:
10001

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGA|GTAAGTTGT
5'SS Class:
major
3'SS Sequence:
TTCCTTCTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTAAAT
U12 Branch Point Sequence:
AGCTATATAACT
Flanking Amino Acid:
LIKTDDVLDLNNSDLIACTV
Intron Amino Acid Position:
689

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.6
0.63
1
72.5
39.9
Major BPS
73.5
0.58
1
79.3
29.4
Major PPT
89.7
0.89
0.6
88.2
21.7
Minor 5ss
43.2
-0.7
2.8
54.8
43.5
Minor BPS
50.8
0.1
1.8
69.17
41.4

Associated Gene:

Gene:
CLEC16A
Ensembl Gene ID:
ENSAPLG00000002585
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045282
16723311 - 16802554
79244
ENSAPLT00000002611
16730536 - 16802292
71757
ENSAPLT00000038623
16723311 - 16802554
79244
ENSAPLT00000023426
16723311 - 16802554
79244
ENSAPLT00000017712
16723311 - 16802554
79244