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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_16774637_16775300_F

Intron Information:

Intron Rank:
19
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
16774637 - 16775300
Intron Length:
664

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGAGGC
5'SS Class:
strong_major
3'SS Sequence:
TCTTTCTGTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TTTTCATTAGCT
Flanking Amino Acid:
GVVKFAGLLQDMQVTGVEDD
Intron Amino Acid Position:
740

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.3
0.93
0.8
73.3
36.4
Major BPS
100
1.24
0.5
100
0
Major PPT
85.2
0.79
0.8
84.4
30.5
Minor 5ss
30.8
-2.2
3.3
41.8
45
Minor BPS
72.7
0.79
1.8
93.66
34

Associated Gene:

Gene:
CLEC16A
Ensembl Gene ID:
ENSAPLG00000002585
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038623
16723311 - 16802554
79244
ENSAPLT00000023426
16723311 - 16802554
79244
ENSAPLT00000017712
16723311 - 16802554
79244
ENSAPLT00000002611
16730536 - 16802292
71757
ENSAPLT00000045282
16723311 - 16802554
79244