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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_16792735_16801921_F

Intron Information:

Intron Rank:
22
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
16792735 - 16801921
Intron Length:
9187

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATTAAAT
5'SS Class:
major
3'SS Sequence:
TTTCTTTCAATAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTGAT
U12 Branch Point Sequence:
TTTTCTTTCAAT
Flanking Amino Acid:
STPSAAQSPSDDPSAPEQPH
Intron Amino Acid Position:
911

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.5
0.6
1
75.3
33.9
Major BPS
88.6
0.96
0.8
77.7
37.1
Major PPT
80
0.68
0.8
77.9
29.4
Minor 5ss
41.3
-1
2.9
57.7
46.5
Minor BPS
68.2
0.65
1.8
88.96
35.8

Associated Gene:

Gene:
CLEC16A
Ensembl Gene ID:
ENSAPLG00000002585
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045282
16723311 - 16802554
79244
ENSAPLT00000023426
16723311 - 16802554
79244
ENSAPLT00000017712
16723311 - 16802554
79244
ENSAPLT00000002611
16730536 - 16802292
71757