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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_16797851_16801921_F

Intron Information:

Intron Rank:
23
Intron Class:
major
Intron Phase:
3UTR
Intron Coordinates:
16797851 - 16801921
Intron Length:
4071

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
CAG|GCAGGTTCC
5'SS Class:
strong_major
3'SS Sequence:
TTTCTTTCAATAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTGAT
U12 Branch Point Sequence:
TTTTCTTTCAAT
Flanking Amino Acid:
3UTR
Intron Amino Acid Position:
3UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.8
0.99
0.9
78.8
33.4
Major BPS
88.6
0.96
0.8
77.7
37.1
Major PPT
80
0.68
0.8
77.9
29.4
Minor 5ss
29.7
-2.3
4
44.1
43.8
Minor BPS
68.2
0.65
1.8
88.96
35.8

Associated Gene:

Gene:
CLEC16A
Ensembl Gene ID:
ENSAPLG00000002585
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038623
16723311 - 16802554
79244