About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_16840884_16843985_F

Intron Information:

Intron Rank:
135797
Intron Class:
major
Intron Phase:
Intron Coordinates:
16840884 - 16843985
Intron Length:
3102

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATAATTT
5'SS Class:
major
3'SS Sequence:
TTATTATTTACAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTTAT
U12 Branch Point Sequence:
TTATTCTTATTA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.7
0.63
1
76.6
32.8
Major BPS
91.4
1.03
0.7
79.9
34.9
Major PPT
86.4
0.82
0.8
80.9
35.5
Minor 5ss
49.3
-0
2.9
73.4
43.4
Minor BPS
67.3
0.54
1.5
75.6
36

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000023123
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023377
16840592 - 16850233
9642