About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_16909882_16910085_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
16909882 - 16910085
Intron Length:
204

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACAGCGG
5'SS Class:
major
3'SS Sequence:
TATTTTCTCTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTTGTAT
U12 Branch Point Sequence:
TTTTGTTGTATT
Flanking Amino Acid:
VPQGRPCLSAGKYVMVMGVV
Intron Amino Acid Position:
91

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
66.6
0.39
1.1
48.7
47.2
Major BPS
53.8
0.09
1.6
57.4
49.1
Major PPT
86.5
0.82
0.7
85.1
29.2
Minor 5ss
28.4
-2.5
3.5
38.7
46.4
Minor BPS
48.5
-0
2.2
76.12
40.9

Associated Gene:

Gene:
RMI2
Ensembl Gene ID:
ENSAPLG00000000827
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000000800
16909611 - 16910234
624